For current Cyprus based pilots:

Your Irish company will remain in place and will be registered for payroll taxes in Cyprus in addition to the social insurance registration if this is already in place.

We already have Cypriot payroll software in place well in advance of the new taxation system starting in January 2022 

Cypriot expenses/per diems are paid tax free and are very similar to the Irish expenses. We will be updating the new Cypriot expense system during December in advance of the new payroll in January.  

Any unused expenses that you have remaining under the Irish system will be paid to you as normal so there will be no change.